CDS
| Accession Number | TCMCG065C25207 |
| gbkey | CDS |
| Protein Id | XP_004976274.1 |
| Location | complement(join(25308351..25309334,25309478..25309663,25310099..25310269,25310644..25310862,25310973..25311224,25311407..25311508,25311635..25311832,25311919..25312173,25312620..25312701,25312814..25312984,25313413..25313540,25313666..25313770,25314225..25314566,25314848..25315050,25316568..25316649,25316793..25316870)) |
| Gene | LOC101768463 |
| GeneID | 101768463 |
| Organism | Setaria italica |
Protein
| Length | 1185aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA207554 |
| db_source | XM_004976217.3 |
| Definition | regulator of nonsense transcripts UPF2 isoform X1 [Setaria italica] |
EGGNOG-MAPPER Annotation
| COG_category | A |
| Description | Regulator of nonsense transcripts |
| KEGG_TC | - |
| KEGG_Module |
M00430
[VIEW IN KEGG] |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko00002 [VIEW IN KEGG] ko03019 [VIEW IN KEGG] |
| KEGG_ko |
ko:K14327
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03013
[VIEW IN KEGG] ko03015 [VIEW IN KEGG] map03013 [VIEW IN KEGG] map03015 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGAGAATACAGAAGAGGAGAGCTGCACGGGAAGCAAGCAAGATGAAGAGGAGCATCGCAGTAATCAAGAGGATGAGAAGGCCCGTCTTGAAGAATACAAAAGGCTTATTGATTTAAAGGCTGCTCTTCGCCAGAGTAACCTAAACCCTGAAAGGCCTGATGCAAATCACATAAGGACTCTTGATTCCAGTATTAAACGCAATACAACAATCATCAAGAAACTCAAAGTGATAAATGATGAAGTAAAGGACGGGTTAATGGAAGAACTGAAAACTGTAAACTTGAGCAAATTTGTCGGTGAAGCAGTTTCTTACATTTGTACTGCCAAGCTCCGTTCTACTGACATACAAGCTGCAGTTCAGATTTGCTCGCTACTCCATCAAAGATACATGGACTTCTCTCCTTGCCTTATTCAAGGACTCTTGAAGACCTTCTATCCTGAGATGTCTGGAGAACCAGATTTAGACAAGAATGCAAGAGCCATGAAGAAGAGAAGCACTCTTAAACTTCTAATGGAACTGTATTTTGTTGGAATTTTTGAAGATGTTAGTACTTTCACAACCATTATAAAGGGTCTTACATCACTGGAGCATTTGAAGGATCGGGAAACAACGCAGACAAATTTGTCTCTCCTTGCTAGTTTTGCTCGTCAAGGAAAATCTTTTCTTGGACTGCAACAACATGAGCAAGATGCTTATGATGAGTTCTTTACCGGCCTCAATATTACTTTTGATCAGAAGATATTCTTTAAGAAAGCCTTTTGCTCTTACTATGATGCAGCAAGCGAACTTCTCTTGTCAGAACATGCGTCTCTTCGTGTGATGGAATTGGAAAATGCAAAAATTTTGAATGCCAAAGGAGAACTCAGCGATGAGAATACTGCCTCATATGAGAATCTGCGAAGATCTTTTGATCAGTTATTGCACTGTGTTTCCTCCTTAGCTGAAGCTCTTGGTATGCAGCCTCCTGTTATGCCGGAAGATGGACATACAACAAGGATTACCACAGGCACTGACTTAACCACTTCTGAGAAAGAATCCTCTGTGGTACAACATATATGGGATGATGAGGACACCAAGGCTTTCTATGAATCTTTACCTGATCTCAGAGCATTTGTGCCTGCTGTACTACTGGGACAAGCTGAACCAACATTGGCAGAGCAGCATGGAAAGGTTCACCAGCAATCTAATGAGTGTACCATGCAGTCAGAGACTGAAGTACAAGATACTGAACATCAATCCGGTGGAAAAACAAATGTGGAGCACAAGAATAGAGTGAACACTGAAAAAGAAAGAGTGGATAAAGAAACATCTGAAGAAATGATTGTTGGCAGGAAAGGAGATACTGAAAGAGAGAAAGTACGAGGCGTAGATGGTGCAAGCTTGGATAGCCTGCTGCAGAAGTTGCCAAGATGTGGTAGCCGTGATCTAGTTGATCAATTGGCAGTAGAGTTTTGCTACCTGAATTCTAAAGCAAACAGGAAGAAACTTGTGCGGGCCTTATTCAGTGTTCCAAGGACTTCTTTGGAACTGCTACCTTACTATTCCCGATTAGTTGCCACCTTGTCGCCATTTATGAAGAATCTTCCGAGTATGCTATTGTCAATGCTTGAAGAGGAGTTTAATTTTTTGATAAATAAGAAGGATCAGATCAAAATTGAAACTAAAATTAGAAACATTCGATTTATTGGGGAGTTGTGCAAATTCAAAATTGCGCCTTCATGCCTTGTTTTTGGCTGTTTGAAGGCTTGCTTAGATGATTTCACACATCATAACATTGATGTGGCCTGCAATCTTCTTGAGACCTGTGGACGCTTTCTTTATCGCTTGCCAGAAACTACAATTCGCATGTCAAACATGTTGGAGATACTGAAGAGATTGAAAAATGTCAAGAATTTGGATGCACACCATAGCACACTTGTAGAAAATGCCTATTACCTATGTAAACCTCCAGAAAGATCTTCCAGAGTCTCTAAACTTCGGCCACATCTACATCAATACATAAGGAGGTTACTTTTCTCCGATCTTGACAAATCTACTGTTCAACATGTTCTTCTTCAATTGCTCAAGTTGTCTTGGGCAGACTGTGAACAGTACCTTGTGAAGTGTTTTCTAAAGGTTCACAAGGGAAAGTATAGCCATGTTCACCTGATTGCTTTACTCACTGCTAGTCTTAGTCACTATCATCATGACTTTGCTGTGACAGTGGTAGATGAGGTTCTAGAGGAGATTAGAGTTGGACTTGAGCTAAACGACTATGCAATGCAGCAGCAACGCCTTGCCCATATGCGGTTTCTTGGGGAGCTATATAACTATGAGTATATTGATTCATCAGTTATATTTGAGACACTAAACCTTCTTACTATATTTGGTCATGGAACACCTGAGCAAGATCTGCTGGATCCCCCGGAAGATTGTTTCAGGATCAGGCTGATCGTTACACTTCTACAGACTTGTGGTCACCATTTTTCTAGAGGCTCTTCAAAAAGAAGGCTCGACAGATTTTTGCTACTTTTTCAAAGATATGCTCTCAGAAAAGGGCCGTTACCACTTGATGTAGAATTTGATGTTCAGGATATGTTTGCTGAGTTACGACCCAAAATGACGAGGCATTCATCCATAGAAGGATTAAATGATGCGCTTGTTGAGCTTGAAGAAAATGAGCGTGTGATGGCAGTTGAGAAAGGTGGAGACAAAAGGCACTTGGACAGTGAATCGCAGTTGAAACAATCTGAAAATGCTGCTTTTGATACAAATGGCAAGAGGGTAGCAAATAGACCTAAGAAAAATGTTAAGAGCCATGAAGACATAGGAGATAGTGAGAGCTCTTCAGATAGCAGAAGCAGATACCGGAGTGGACATGAAGACGGGGAAAGTTTTCCGTACGAGGAAACATTAGATGACAGGTTGGAAAATGAAGACCACAGTGAGGACATTGATGCACCTGTTGGTTCAGATGAAGAAGGAACTGTTGAGGTTCGACGGAAGGTGGTGCAAGTTGATGCTAAGGAACAAGAAGACTTTGACAGAGAACTGAAAGCCATTCTTCAGGAAAGCTTGGAGTCACGTAAGTTGGAGCTGGCTAGGCCCACTGTGAACATGACGATACCAATGAATGCCTTTGAGGGGTCAAAGGACTTGATGGCCATTGAAGCAGCGGACAAAGAAAATGTGTGTGGTGACGGTGAGATTGGCAAACCTGGTGATCTCGGCGACGTGCGCGTCAAGGTGCTTGTGAAGAGAGGGCATAAGCAGCAGACGAAGCAAATGCTCATCCCCGGGGACTGCCCACTCGTGCAGAGCACGAAGCAGCAGAGTGCTGCTGAGCTCGAGGAGATGCAGAACATCAAGCGGAAAATTCTTGAGTACAACGAAAGGGAGGAAGAGCTGGACGCAGGGTCGCTGCAAGGCGGGGACTGGGACCAAGGAGGAAGCGGCAACATGCCTCTTGCTGGATGGCCGGGGCGTGTTAGCTGGGTTGGTCCAAACAGAGTTGGAGGCGTTCGGCGGCACTACTGGGTTGCTGGTGGGTTCTACCGTGGCTATGGAAGAAGGTGA |
| Protein: MENTEEESCTGSKQDEEEHRSNQEDEKARLEEYKRLIDLKAALRQSNLNPERPDANHIRTLDSSIKRNTTIIKKLKVINDEVKDGLMEELKTVNLSKFVGEAVSYICTAKLRSTDIQAAVQICSLLHQRYMDFSPCLIQGLLKTFYPEMSGEPDLDKNARAMKKRSTLKLLMELYFVGIFEDVSTFTTIIKGLTSLEHLKDRETTQTNLSLLASFARQGKSFLGLQQHEQDAYDEFFTGLNITFDQKIFFKKAFCSYYDAASELLLSEHASLRVMELENAKILNAKGELSDENTASYENLRRSFDQLLHCVSSLAEALGMQPPVMPEDGHTTRITTGTDLTTSEKESSVVQHIWDDEDTKAFYESLPDLRAFVPAVLLGQAEPTLAEQHGKVHQQSNECTMQSETEVQDTEHQSGGKTNVEHKNRVNTEKERVDKETSEEMIVGRKGDTEREKVRGVDGASLDSLLQKLPRCGSRDLVDQLAVEFCYLNSKANRKKLVRALFSVPRTSLELLPYYSRLVATLSPFMKNLPSMLLSMLEEEFNFLINKKDQIKIETKIRNIRFIGELCKFKIAPSCLVFGCLKACLDDFTHHNIDVACNLLETCGRFLYRLPETTIRMSNMLEILKRLKNVKNLDAHHSTLVENAYYLCKPPERSSRVSKLRPHLHQYIRRLLFSDLDKSTVQHVLLQLLKLSWADCEQYLVKCFLKVHKGKYSHVHLIALLTASLSHYHHDFAVTVVDEVLEEIRVGLELNDYAMQQQRLAHMRFLGELYNYEYIDSSVIFETLNLLTIFGHGTPEQDLLDPPEDCFRIRLIVTLLQTCGHHFSRGSSKRRLDRFLLLFQRYALRKGPLPLDVEFDVQDMFAELRPKMTRHSSIEGLNDALVELEENERVMAVEKGGDKRHLDSESQLKQSENAAFDTNGKRVANRPKKNVKSHEDIGDSESSSDSRSRYRSGHEDGESFPYEETLDDRLENEDHSEDIDAPVGSDEEGTVEVRRKVVQVDAKEQEDFDRELKAILQESLESRKLELARPTVNMTIPMNAFEGSKDLMAIEAADKENVCGDGEIGKPGDLGDVRVKVLVKRGHKQQTKQMLIPGDCPLVQSTKQQSAAELEEMQNIKRKILEYNEREEELDAGSLQGGDWDQGGSGNMPLAGWPGRVSWVGPNRVGGVRRHYWVAGGFYRGYGRR |